| Ganado Mission - Sage Memorial Hospital | Ganado, NN | 349 | 236 | - |
| Chuska Community Boarding School BIA | Tohatchi, NN | 348 | 234 | - |
| Coppermine NTUA | Ft Defiance, NN | 342 | 37 | - |
| Low Mountain Boarding School BIA | Pinon, NN | 339 | 163 | - |
| Wheatfields NTUA | Ft Defiance, NN | 321 | 115 | - |
| Monument Valley Mission - Hospital | Monument Valley, NN | 303 | 578 | - |
| Todahaidekani NTUA | Ft Defiance, NN | 301 | 140 | - |
| Teec Nos Pos Community Boarding School BIA | Teec Nos Pos, NN | 300 | 96 | - |
| Dennehotso Boarding School BIA | Dennehotso, NN | 300 | 101 | - |
| Tonalea (Red Lake) Day School BIA | Tonalea, NN | 300 | 103 | - |
| Fire Rock Navajo Casino | Church Rock, NN | 300 | 76 | - |
| Gouldings Trading Post and Lodge | Monument Valley, NN | 300 | 432 | - |
| Ramah-Sunset Valley RNUA | Pinehill, NN | 294 | 553 | - |
| Mexican Water NTUA | Ft Defiance, NN | 294 | 141 | - |
| Long House Valley NTUA | Ft Defiance, NN | 277 | 33 | - |
| Whitehorse Lake NTUA | Ft Defiance, NN | 277 | 60 | - |
| Monument Valley Navajo Tribal Park | Monument Valley, NN | 275 | 117 | - |
| Mexican Springs West Rural NTUA | Ft Defiance, NN | 257 | 56 | - |
| Leupp Contract Boarding School BIA | Winslow, NN | 250 | 90 | - |
| Rocky Ridge Boarding School BIA | Kykotsmovi, NN | 250 | 163 | - |
| Seba Dalkai Boarding School BIA | Winslow, NN | 250 | 191 | - |
| Crystal Community Boarding School BIA | Navajo, NN | 248 | 73 | - |
| Tohatchi Public School | Tohatchi, NN | 240 | 663 | - |
| Mexican Hat NTUA | Ft Defiance, NN | 239 | 34 | - |
| Forest Lake NTUA | Ft Defiance, NN | 233 | 45 | - |
| Nazlini Community Boarding School BIA | Ganado, NN | 230 | 182 | - |
| Pine Springs NTUA | Ft Defiance, NN | 222 | 114 | - |
| Chinle USD 24 Administration Center | Chinle, NN | 220 | 210 | - |
| Wide Ruins Community Boarding School BIA | Chambers, NN | 215 | 104 | - |
| Ramah-Mountain View RNUA | Pinehill, NN | 215 | 666 | - |
| Casa Del Eco Mesa NTUA | Ft Defiance, NN | 211 | 139 | - |
| Alamo-Alamo Springs | Alamo, NN | 210 | 820 | - |
| Rough Rock Demonstration School BIA | Chinle, NN | 200 | 181 | - |
| Toadlena Boarding School BIA | Newcomb, NN | 200 | 153 | - |
| Aneth Community School BIA | Montezuma Creek, NN | 192 | 47 | - |
| White Post Mission NTUA | Ft Defiance, NN | 185 | 1,145 | - |
| Cottonwood Day School BIA | Chinle, NN | 185 | 113 | - |
| Kinlichee Community School BIA | Ganado, NN | 174 | 106 | - |
| Hunters Point Boarding School BIA | Saint Michaels, NN | 173 | 132 | - |
| Ramah-Ramah Rural RNUA | Pinehill, NN | 165 | 538 | - |
| Navajo Mountain Community Boarding School BIA | Tonalea, NN | 163 | 88 | - |
| Mariano Lake Community School BIA | Crownpoint, NN | 160 | 31 | - |
| Tseiiahi (Standing Rock) Community School BIA | Crownpoint, NN | 143 | 28 | - |
| Chilchinbeto Community Day School BIA | Kayenta, NN | 138 | 143 | - |
| Keyah 1 NAPI NTUA | Ft Defiance, NN | 133 | 65 | - |
| Pine Springs Day School BIA | Houck, NN | 122 | 61 | - |
| Beclabito Day School BIA | Shiprock, NN | 120 | 115 | - |
| Former Pueblo Pintado Boarding School BIA | Cuba, NN | 103 | 55 | - |
| Kinlichee Staff Housing BIA | Ganado, NN | 80 | 145 | - |
| Sanostee (New) Day School BIA | Sanostee, NN | 80 | 11 | - |